2012年4月10日

Biocuration2012

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Andrew Su @andrewsu

W5: UniProt section starting -- first talk on manual annotation efforts in UniProtKB/Swiss-Prot (computational preds in TrEMBL) #isb2012

2012-04-04 03:30:17
Andrew Su @andrewsu

W5: Biocurators read & curated 9000 articles btw Jan 2011 to Jan 2012 - indicates paper selection is critical #isb2012

2012-04-04 03:32:04
Andrew Su @andrewsu

W5: prioritize previously uncharacterized proteins, new functions of characterized prots, recent high impact papers, user requests #isb2012

2012-04-04 03:33:51
Andrew Su @andrewsu

W5: info curated: seq, seq features, variants, nomenclature, annotations (free text?), ontologies/GO terms, references #isb2012

2012-04-04 03:37:06
Andrew Su @andrewsu

W5: importance of manual curation using SIRT5 example (http://t.co/iAhnyUZH); integration of conflicting data form multiple orgs #isb2012

2012-04-04 03:46:43
Andrew Su @andrewsu

W5: UniRule automatic annotation: manual rule creation based on taxonomy, interpro signatures, seq features -> prot names, annot #isb2012

2012-04-04 03:55:29
Marc RobinsonRechavi 💉 😷 @marc_rr

great presentation by Nives Skunca on stability of GO annotations; paper just accepted in PLoS CB; poster P154 #isb2012

2012-04-04 04:00:04
jimhu @jimhu

#isb2012 Suzi Lewis. GO and quality filters.

2012-04-04 04:03:47
Andrew Su @andrewsu

W5: Claire O’Donovan: UniProt: Coordinating annotation with other database resources; extensive xreferencing to 120 external DBs #isb2012

2012-04-04 04:08:07
jimhu @jimhu

#isb2012 Suzi Lewis: Humans don't make fewer errors than computers, they just make less systematic errors.

2012-04-04 04:09:28
attilacsordas @attilacsordas

RT @jimhu: #isb2012 Suzi Lewis: Humans don't make fewer errors than computers, they just make less systematic errors.

2012-04-04 04:11:52
Andrew Su @andrewsu

W5: full list of UniProt link outs (http://t.co/OpxRM7oo); also import annots from MODs, also IntAct and PRIDE #isb2012

2012-04-04 04:15:13
Marc RobinsonRechavi 💉 😷 @marc_rr

Frederic Bastian: not sure there can be a common way to record quality accross different databases; discussion open #isb2012

2012-04-04 04:19:47
maximilianh @maximilianh

RT @jimhu: #isb2012 Suzi Lewis: Humans don't make fewer errors than computers, they just make less systematic errors.

2012-04-04 04:23:29
Fiona Brinkman @fionabrinkman

Thx for this! RT @iddux: My mistake. ViralZone has phages. @marc_rr http://t.co/NjtdnvRJ even archaea! Attn. @fionabrinkman #isb2012

2012-04-04 04:23:34
attilacsordas @attilacsordas

RT @marc_rr: discussion that "quality" might not the right concept to discuss; rather reproducibility or context? #isb2012

2012-04-04 04:28:49
Andrew Su @andrewsu

W5: Maria Martin: complete proteomes http://t.co/zp02Y2IQ; prot seqs from INSDC, seq annot from Ensembl w/ xrefs; then manual annot #isb2012

2012-04-04 04:30:48
jimhu @jimhu

#isb2012 do we need a Queasiness Ontology?

2012-04-04 04:31:29
Sarah Carl @SarahHCarl

@Drosophilic What's your take on eLife? http://t.co/19zUqwNj Any discussion at the #isb2012 in regards #openaccess?

2012-04-04 04:38:21
Marc RobinsonRechavi 💉 😷 @marc_rr

Suzi Lewis: parallel between open criticism of science / data and evidence-based medicine. We're allowed to hurt fragile egos. #isb2012

2012-04-04 04:48:39
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