[not completed] CSEL meeting biodata14 tweets personal collection [未完]

Posters should go up around lunch today in Bush auditorium and they can stay up there for the meeting #biodata14

2014-11-07 00:41:59

Nicolas Robine @notSoJunkDNA

Bummed to miss #biodata14, but already looking at the program for #bog15 meetings.cshl.edu/meetings/2015/… With the great @darnelr as Invited Speaker!

2014-11-07 00:43:26

Barrett Foat @BarrettFoat

Massie: Illumina estimates 228,000 genomes were created in 2014. #biodata14

2014-11-07 00:43:26

Matt Massie next: Building fast, petabyte-scale biological data systems #biodata14

2014-11-07 00:43:38

Matt Massie on "Building fast, petabyte-scale biological data systems" #biodata14

2014-11-07 00:44:09

Horizon Discovery @HZDiscovery

Come see our talk on Power Decoder! Last talk before lunch. #shRNA #biodata14

2014-11-07 00:44:43

MM: Apache Spark set record for Daytona Gray Sort. 100 TB sort in 23 min. #biodata14

2014-11-07 00:45:23

MM: ADAM platform - develop algorithms without thinking about distributed systems failures. jobs run locally or cluster. scalable.#biodata14

2014-11-07 00:47:11

MM: ADAM platform abstracts difficulties of distributed computing, run code anywhere, uses off the shelf hardware, open source #biodata14

2014-11-07 00:47:19

Matt Massie from UCB AMP lab talking about the ADAM platform. Use of Avro. #biodata14

2014-11-07 00:48:14

MM: define records with Avro. makes data representation explicit. reduces error, multiple language support. #biodata14

2014-11-07 00:48:58

MM: Avro IDL for defining data representation, multiple language support. Parquet column file format parquet.io #biodata14

2014-11-07 00:50:20

MM: parquet - a column oriented file format. helps w compression. helps process only data thats needed. #biodata14

2014-11-07 00:51:47

MM: bdgenomics.org - website to collaborate and work with this project. #biodata14

2014-11-07 00:53:07

MM shows really neat example of kmer counting from a BAM using ADAM, process only sequence field. #biodata14

2014-11-07 00:54:03

WDemos @DemosWM

#biodata14 MM at BCM can analyze whole genome in minutes

2014-11-07 00:58:59

@bffo@mastodon.social BF Francis Ouellette @bffo

1st session at #biodata14 Fully tweetable —hope we keep this up throughout the 4 days. pic.twitter.com/ergS1Gc5Ie

2014-11-07 00:59:11

拡大

MM talks about importance of good standard benchmarks to improve performance. don't lose accuracy with speed. couldn't agree more.#biodata14

2014-11-07 01:03:28

Next up Hayan Lee from @mike_schatz lab talking about "Sugarcane genome de novo assembly challenge". #biodata14

2014-11-07 01:06:32

just curious, anyone else seeing 'ARP cache poison' warnings on the wifi network ? #biodata14 pic.twitter.com/vmOruc1x1P

2014-11-07 01:07:24

拡大

@bffo@mastodon.social BF Francis Ouellette @bffo

Organizers, inspiration and Keynote from #biodata14 CC/ @deannachurch @mike_schatz pic.twitter.com/qjcb5tggkv

2014-11-07 01:10:10

拡大

Hayan Lee: Why is Sugarcane assembly is hard? Polyploidy/Aneuploidy & large scale recombination #biodata14

2014-11-07 01:10:21