CSHL GENOME INFORMATICS 2011 day1
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- いいね！0
BF Francis Ouellette
@bffo
hashtag for CSHL Genome Informatics 2011: #gi2011 All in favor?
2011-11-03 00:06:13
Iddo Friedberg 💔𐤅𐤉𐤃𐤏
@iddux
On my way to CSHL genome informatics to talk about Critical Assessment of protein Function Annotation http://t.co/Nn945cf5 #gi2011
2011-11-03 00:34:44
Iddo Friedberg 💔𐤅𐤉𐤃𐤏
@iddux
Seem to be to many hashtags for cshl. Genome informatics. I favor #gi2011 because 1. It is short & 2. @bffo said so.
2011-11-03 00:40:15
Genome Research
@genomeresearch
#cshlgi has also been suggested by @genetics_blog @dgmacarthur RT @bffo: hashtag for CSHL Genome Informatics 2011: #gi2011 All in favor?
2011-11-03 01:37:55
Stephen Turner
@strnr
Alright CSH genome informatics tweeps, I'm behind #GI2011 - short and easier than #CSHLGI or #CSHINGO11.
2011-11-03 05:27:13
Iddo Friedberg 💔𐤅𐤉𐤃𐤏
@iddux
View from my room @cshl #cshlgi #gi2011 http://t.co/W67eHqZn
2011-11-03 05:34:09
Iddo Friedberg 💔𐤅𐤉𐤃𐤏
@iddux
Beautiful. CHSL at sunset. #gi2011 #fb http://t.co/3t9Uy3PI
2011-11-03 06:02:25
Stephen Turner
@strnr
Lots of next-generation sequencing pipelines and analysis suites in the #gi2011 program #bioinformatics
2011-11-03 06:38:50
SGD Project @yeastgenome@genomic.social (bsky too)
@yeastgenome
Aye - SGD'ers are in. RT @bffo: hashtag for CSHL Genome Informatics 2011: #gi2011 All in favor?
2011-11-03 06:39:04
Stephen Turner
@strnr
Nice lineup for #gi2011 first session, transcriptomics, alt splicing, gene predictions. Most talks tweetable.
2011-11-03 08:31:40
Stephen Turner
@strnr
1st up gunner ratsch - read mapping and transcript identification and quantification #GI2011
2011-11-03 08:32:40
BF Francis Ouellette
@bffo
so far, 1st session genome informatics on transcriptomics 6/8 twitable, good start for a CSHL meeting #gi2011
2011-11-03 08:35:59
SGD Project @yeastgenome@genomic.social (bsky too)
@yeastgenome
#gi2011 underway. We'll be passing on analysis tools and pipelines that might be useful for the yeast community.
2011-11-03 08:40:15
Stephen Turner
@strnr
GR: rQuant simutaneously estimates transcript abundance accounting for RNA-seq biases http://t.co/7ySruFnS #GI2011
2011-11-03 08:41:45
Stephen Turner
@strnr
Flux simulator for simulating RNA-seq data http://t.co/FIiC3KZ3 #gi2011
2011-11-03 08:42:36
Stephen Turner
@strnr
GR: read mapping not fully solved yet. lots of work on this front being presented later at #gi2011
2011-11-03 08:56:04
Stephen Turner
@strnr
`On that note, talk 2: Thomas Wu speaking on accurate mapping of RNA-seq data, analysis of alt splicing and gene fusion #gi2011
2011-11-03 08:58:10
Will Spooner
@wspoonr
Gunnar Ratsch highlights need for variant aware aligners. #gi2011
2011-11-03 09:02:49
Stephen Turner
@strnr
T. Wu talking about GSTRUCT for accurate gene structure inference from RNA seq data. Can't seem to find it with Google #gi2011
2011-11-03 09:03:24
Will Spooner
@wspoonr
I'm a fan of Gunnar's work at Max Planck, so nice start to #gi2011.
2011-11-03 09:05:05
Stephen Turner
@strnr
GMAP and other genentech #bioinformatics software available http://t.co/S4kwQHhg #gi2011
2011-11-03 09:06:45
Mario Caccamo
@mcaccamo
At Genome Informatics #gi2011 transcriptomics session (T Wu talking about GSNAP)
2011-11-03 09:07:54
Nakazato T.
@chalkless
RGASP: RNAseq Genome Annotation Assessment Project - http://t.co/wD4u9XZ2 #cshlgi #gi2011
2011-11-03 09:09:36
BF Francis Ouellette
@bffo
TW on GSNAP to find genes http://t.co/peZwqmGJ #gi2011 (argh "highly homologous" bad expression)
2011-11-03 09:10:44
Stephen Turner
@strnr
GSTRUCT attempts to infer main isoform (path with greatest number of splices), then find differences (not all possible combinations) #gi2011
2011-11-03 09:12:40